HPC Topics

High Performance Computing Topics

Message Passing Interface

TOPIC	DESCRIPTION
MPI Notes	DeinoMPI: site with list of all MPI2 functions and code snippet examples: http://mpi.deino.net/mpi_functions/index.htm DStanzione.Advanced-MPI-Porto-09.ppt J. Burkardt codes: http://people.sc.fsu.edu/~jburkardt/c_src/c_src.html
MPI Tutorials	NASA MPI Tutorials - Parts I & II:https://edoras.sdsu.edu/~mthomas/docs/mpi/nasa.tutorial/ MPI Tutorial (ANL): http://www.mcs.anl.gov/research/projects/mpi/tutorial/mpiexmpl Advanced MPI: Using MPI-2 Tutorial (Gropp, 2014) slides.pdf code-examples.tar.gz Distributed Memory Programming with MPI: http://people.sc.fsu.edu/~jburkardt/classes/acs2_2008/mpi/mpi.pdf
MPI Comms	MPI Communications Performance. (Thomas, COMP605) gropp-usingmpi-comm-tests.pptx Gropp: Strategies for Parallelism and Halo Exchange
MPI Cartesian Topologies	MPI Cartesian Communicators and Topologies: Overview MThomas-MPI-Cart-Comms-DataDistr-PDEs.pdf MThomas-MPI-Cart-Comms-and-Topos.pdf VirtualTopologies.pdf
MPI Halo Exchange	MThomas-Halo-Exchange-Game-of-Life-notes Gropp: MPI2-Halo Exchange, Game of Life Notes Gropp: Strategies for Parallelism and Halo Exchange Gropp: Ghost Cell Pattern
NetCDF	asu.edu.matlab_netcdf_guide.pdf MThomas_NetCDF_Notes.pdf
AdvMPI - ParIO	MThomas_MPI_ParIO.pdf Gropp-Intro-to-MPI-IO-lecture32 Gropp: Parallel I/O Examples. SciNet.UToronto.40TB.pdf scinet.utoronto.ParIO-HPCS2012.pdf scinet.utoronto.ParIO-HPCS2012.tgz cmes.colorado.edu.mpi-io.ppt
AdvMPI - Misc Topics	AdvMPI-Overview.pdf AdvMPI-2DStencil-PoissonProblem.pdf C.Truini, CINECA: Notes on MPI2-DataTypes-handouts.pdf AdvMPI-DerivedDatatypes.pdf (Gropp) AdvMPI-NonBlockCollectives-Topos-NbrColl.pdf AdvMPI-One-sided-Comms.pdf AdvMPI-Accel-Thds-ShMem-GPU.pdf
Other Reading	MPI: A Message-Passing Interface Standard Version 2.2: ihttp://www.mpi-forum.org/docs/mpi-2.2/mpi22-report/mpi22-report.htm ANL MPI Web Pages (Fortran and C API): http://www.mcs.anl.gov/research/projects/mpi/www MPI Standard Version 2.2: http://www.mpi-forum.org/docs/mpi22-report/mpi22-report.htm

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