Advanced Bash-Scripting Guide:
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15.5. File and Archiving Commands

Archiving

tar

The standard UNIX archiving utility. [1] Originally a Tape ARchiving program, it has developed into a general purpose package that can handle all manner of archiving with all types of destination devices, ranging from tape drives to regular files to even stdout (see Example 3-4). GNU tar has been patched to accept various compression filters, for example: tar czvf archive_name.tar.gz *, which recursively archives and gzips all files in a directory tree except dotfiles in the current working directory ($PWD). [2]

Some useful tar options:

-c create (a new archive)
-x extract (files from existing archive)
--delete delete (files from existing archive)
This option will not work on magnetic tape devices.
-r append (files to existing archive)
-A append (tar files to existing archive)
-t list (contents of existing archive)
-u update archive
-d compare archive with specified filesystem
--after-date only process files with a date stamp after specified date
-z gzip the archive
(compress or uncompress, depending on whether combined with the -c or -x) option
-j bzip2 the archive

It may be difficult to recover data from a corrupted gzipped tar archive. When archiving important files, make multiple backups.

shar

Shell archiving utility. The files in a shell archive are concatenated without compression, and the resultant archive is essentially a shell script, complete with #!/bin/sh header, and containing all the necessary unarchiving commands. Shar archives still show up in Usenet newsgroups, but otherwise shar has been pretty well replaced by tar/gzip. The unshar command unpacks shar archives.

ar

Creation and manipulation utility for archives, mainly used for binary object file libraries.

rpm

The Red Hat Package Manager, or rpm utility provides a wrapper for source or binary archives. It includes commands for installing and checking the integrity of packages, among other things.

A simple rpm -i package_name.rpm usually suffices to install a package, though there are many more options available.

rpm -qf identifies which package a file originates from.

bash$ rpm -qf /bin/ls coreutils-5.2.1-31

rpm -qa gives a complete list of all installed rpm packages on a given system. An rpm -qa package_name lists only the package(s) corresponding to package_name.

bash$ rpm -qa redhat-logos-1.1.3-1 glibc-2.2.4-13 cracklib-2.7-12 dosfstools-2.7-1 gdbm-1.8.0-10 ksymoops-2.4.1-1 mktemp-1.5-11 perl-5.6.0-17 reiserfs-utils-3.x.0j-2 ... bash$ rpm -qa docbook-utils docbook-utils-0.6.9-2 bash$ rpm -qa docbook | grep docbook docbook-dtd31-sgml-1.0-10 docbook-style-dsssl-1.64-3 docbook-dtd30-sgml-1.0-10 docbook-dtd40-sgml-1.0-11 docbook-utils-pdf-0.6.9-2 docbook-dtd41-sgml-1.0-10 docbook-utils-0.6.9-2

cpio

This specialized archiving copy command (copy input and output) is rarely seen any more, having been supplanted by tar/gzip. It still has its uses, such as moving a directory tree. With an appropriate block size (for copying) specified, it can be appreciably faster than tar.

Example 15-28. Using cpio to move a directory tree

#!/bin/bash

# Copying a directory tree using cpio.

# Advantages of using 'cpio':
#   Speed of copying. It's faster than 'tar' with pipes.
#   Well suited for copying special files (named pipes, etc.)
#+  that 'cp' may choke on.

ARGS=2
E_BADARGS=65

if [ $# -ne "$ARGS" ]
then
  echo "Usage: `basename $0` source destination"
  exit $E_BADARGS
fi  

source="$1"
destination="$2"

###################################################################
find "$source" -depth | cpio -admvp "$destination"
#               ^^^^^         ^^^^^
#  Read the 'find' and 'cpio' info pages to decipher these options.
#  The above works only relative to $PWD (current directory) . . .
#+ full pathnames are specified.
###################################################################


# Exercise:
# --------

#  Add code to check the exit status ($?) of the 'find | cpio' pipe
#+ and output appropriate error messages if anything went wrong.

exit $?

rpm2cpio

This command extracts a cpio archive from an rpm one.

Example 15-29. Unpacking an rpm archive

#!/bin/bash
# de-rpm.sh: Unpack an 'rpm' archive

: ${1?"Usage: `basename $0` target-file"}
# Must specify 'rpm' archive name as an argument.


TEMPFILE=$$.cpio                         #  Tempfile with "unique" name.
                                         #  $$ is process ID of script.

rpm2cpio < $1 > $TEMPFILE                #  Converts rpm archive into
                                         #+ cpio archive.
cpio --make-directories -F $TEMPFILE -i  #  Unpacks cpio archive.
rm -f $TEMPFILE                          #  Deletes cpio archive.

exit 0

#  Exercise:
#  Add check for whether 1) "target-file" exists and
#+                       2) it is an rpm archive.
#  Hint:                    Parse output of 'file' command.

Compression

gzip

The standard GNU/UNIX compression utility, replacing the inferior and proprietary compress. The corresponding decompression command is gunzip, which is the equivalent of gzip -d.

The -c option sends the output of gzip to stdout. This is useful when piping to other commands.

The zcat filter decompresses a gzipped file to stdout, as possible input to a pipe or redirection. This is, in effect, a cat command that works on compressed files (including files processed with the older compress utility). The zcat command is equivalent to gzip -dc.

On some commercial UNIX systems, zcat is a synonym for uncompress -c, and will not work on gzipped files.

See also Example 10-3.

vdir

Show a detailed directory listing. The effect is similar to ls -lb.

This is one of the GNU fileutils.

bash$ vdir total 10 -rw-r--r-- 1 bozo bozo 4034 Jul 18 22:04 data1.xrolo -rw-r--r-- 1 bozo bozo 4602 May 25 13:58 data1.xrolo.bak -rw-r--r-- 1 bozo bozo 877 Dec 17 2000 employment.xrolo bash ls -l total 10 -rw-r--r-- 1 bozo bozo 4034 Jul 18 22:04 data1.xrolo -rw-r--r-- 1 bozo bozo 4602 May 25 13:58 data1.xrolo.bak -rw-r--r-- 1 bozo bozo 877 Dec 17 2000 employment.xrolo

locate, slocate

The locate command searches for files using a database stored for just that purpose. The slocate command is the secure version of locate (which may be aliased to slocate).

$bash locate hickson
/usr/lib/xephem/catalogs/hickson.edb

readlink

Disclose the file that a symbolic link points to.

bash$ readlink /usr/bin/awk ../../bin/gawk

strings

Use the strings command to find printable strings in a binary or data file. It will list sequences of printable characters found in the target file. This might be handy for a quick 'n dirty examination of a core dump or for looking at an unknown graphic image file (strings image-file | more might show something like JFIF, which would identify the file as a jpeg graphic). In a script, you would probably parse the output of strings with grep or sed. See Example 10-7 and Example 10-9.

Example 15-32. An "improved" strings command

#!/bin/bash
# wstrings.sh: "word-strings" (enhanced "strings" command)
#
#  This script filters the output of "strings" by checking it
#+ against a standard word list file.
#  This effectively eliminates gibberish and noise,
#+ and outputs only recognized words.

# ===========================================================
#                 Standard Check for Script Argument(s)
ARGS=1
E_BADARGS=65
E_NOFILE=66

if [ $# -ne $ARGS ]
then
  echo "Usage: `basename $0` filename"
  exit $E_BADARGS
fi

if [ ! -f "$1" ]                      # Check if file exists.
then
    echo "File \"$1\" does not exist."
    exit $E_NOFILE
fi
# ===========================================================


MINSTRLEN=3                           #  Minimum string length.
WORDFILE=/usr/share/dict/linux.words  #  Dictionary file.
                                      #  May specify a different
                                      #+ word list file
                                      #+ of one-word-per-line format.


wlist=`strings "$1" | tr A-Z a-z | tr '[:space:]' Z | \
tr -cs '[:alpha:]' Z | tr -s '\173-\377' Z | tr Z ' '`

# Translate output of 'strings' command with multiple passes of 'tr'.
#  "tr A-Z a-z"  converts to lowercase.
#  "tr '[:space:]'"  converts whitespace characters to Z's.
#  "tr -cs '[:alpha:]' Z"  converts non-alphabetic characters to Z's,
#+ and squeezes multiple consecutive Z's.
#  "tr -s '\173-\377' Z"  converts all characters past 'z' to Z's
#+ and squeezes multiple consecutive Z's,
#+ which gets rid of all the weird characters that the previous
#+ translation failed to deal with.
#  Finally, "tr Z ' '" converts all those Z's to whitespace,
#+ which will be seen as word separators in the loop below.

#  ****************************************************************
#  Note the technique of feeding the output of 'tr' back to itself,
#+ but with different arguments and/or options on each pass.
#  ****************************************************************


for word in $wlist                    # Important:
                                      # $wlist must not be quoted here.
                                      # "$wlist" does not work.
                                      # Why not?
do

  strlen=${#word}                     # String length.
  if [ "$strlen" -lt "$MINSTRLEN" ]   # Skip over short strings.
  then
    continue
  fi

  grep -Fw $word "$WORDFILE"          #  Match whole words only.
#      ^^^                            #  "Fixed strings" and
                                      #+ "whole words" options. 

done  


exit $?

Comparison

diff, patch

diff: flexible file comparison utility. It compares the target files line-by-line sequentially. In some applications, such as comparing word dictionaries, it may be helpful to filter the files through sort and uniq before piping them to diff. diff file-1 file-2 outputs the lines in the files that differ, with carets showing which file each particular line belongs to.

The --side-by-side option to diff outputs each compared file, line by line, in separate columns, with non-matching lines marked. The -c and -u options likewise make the output of the command easier to interpret.

There are available various fancy frontends for diff, such as sdiff, wdiff, xdiff, and mgdiff.

The diff command returns an exit status of 0 if the compared files are identical, and 1 if they differ. This permits use of diff in a test construct within a shell script (see below).

A common use for diff is generating difference files to be used with patch The -e option outputs files suitable for ed or ex scripts.

patch: flexible versioning utility. Given a difference file generated by diff, patch can upgrade a previous version of a package to a newer version. It is much more convenient to distribute a relatively small "diff" file than the entire body of a newly revised package. Kernel "patches" have become the preferred method of distributing the frequent releases of the Linux kernel.

patch -p1 <patch-file # Takes all the changes listed in 'patch-file' # and applies them to the files referenced therein. # This upgrades to a newer version of the package.

Patching the kernel:

cd /usr/src gzip -cd patchXX.gz | patch -p0 # Upgrading kernel source using 'patch'. # From the Linux kernel docs "README", # by anonymous author (Alan Cox?).

The diff command can also recursively compare directories (for the filenames present).

bash$ diff -r ~/notes1 ~/notes2 Only in /home/bozo/notes1: file02 Only in /home/bozo/notes1: file03 Only in /home/bozo/notes2: file04

Use zdiff to compare gzipped files.

Use diffstat to create a histogram (point-distribution graph) of output from diff.

diff3

An extended version of diff that compares three files at a time. This command returns an exit value of 0 upon successful execution, but unfortunately this gives no information about the results of the comparison.

bash$ diff3 file-1 file-2 file-3 ==== 1:1c This is line 1 of "file-1". 2:1c This is line 1 of "file-2". 3:1c This is line 1 of "file-3"

sdiff

Compare and/or edit two files in order to merge them into an output file. Because of its interactive nature, this command would find little use in a script.

cmp

The cmp command is a simpler version of diff, above. Whereas diff reports the differences between two files, cmp merely shows at what point they differ.

Like diff, cmp returns an exit status of 0 if the compared files are identical, and 1 if they differ. This permits use in a test construct within a shell script.

Example 15-33. Using cmp to compare two files within a script.

#!/bin/bash

ARGS=2  # Two args to script expected.
E_BADARGS=65
E_UNREADABLE=66

if [ $# -ne "$ARGS" ]
then
  echo "Usage: `basename $0` file1 file2"
  exit $E_BADARGS
fi

if [[ ! -r "$1" || ! -r "$2" ]]
then
  echo "Both files to be compared must exist and be readable."
  exit $E_UNREADABLE
fi

cmp $1 $2 &> /dev/null  # /dev/null buries the output of the "cmp" command.
#   cmp -s $1 $2  has same result ("-s" silent flag to "cmp")
#   Thank you  Anders Gustavsson for pointing this out.
#
# Also works with 'diff', i.e.,   diff $1 $2 &> /dev/null

if [ $? -eq 0 ]         # Test exit status of "cmp" command.
then
  echo "File \"$1\" is identical to file \"$2\"."
else  
  echo "File \"$1\" differs from file \"$2\"."
fi

exit 0

Use zcmp on gzipped files.

comm

Versatile file comparison utility. The files must be sorted for this to be useful.

comm -options first-file second-file

comm file-1 file-2 outputs three columns:

column 1 = lines unique to file-1
column 2 = lines unique to file-2
column 3 = lines common to both.

The options allow suppressing output of one or more columns.

-1 suppresses column 1
-2 suppresses column 2
-3 suppresses column 3
-12 suppresses both columns 1 and 2, etc.

This command is useful for comparing "dictionaries" or word lists -- sorted text files with one word per line.

Utilities

basename

Strips the path information from a file name, printing only the file name. The construction basename $0 lets the script know its name, that is, the name it was invoked by. This can be used for "usage" messages if, for example a script is called with missing arguments:
echo "Usage: `basename $0` arg1 arg2 ... argn"

dirname

Strips the basename from a filename, printing only the path information.

basename and dirname can operate on any arbitrary string. The argument does not need to refer to an existing file, or even be a filename for that matter (see Example A-7).

Example 15-34. basename and dirname

#!/bin/bash

a=/home/bozo/daily-journal.txt

echo "Basename of /home/bozo/daily-journal.txt = `basename $a`"
echo "Dirname of /home/bozo/daily-journal.txt = `dirname $a`"
echo
echo "My own home is `basename ~/`."         # `basename ~` also works.
echo "The home of my home is `dirname ~/`."  # `dirname ~`  also works.

exit 0

split, csplit

These are utilities for splitting a file into smaller chunks. Their usual use is for splitting up large files in order to back them up on floppies or preparatory to e-mailing or uploading them.

The csplit command splits a file according to context, the split occuring where patterns are matched.

Example 15-35. A script that copies itself in sections

#!/bin/bash
# splitcopy.sh

#  A script that splits itself into chunks,
#+ then reassembles the chunks into an exact copy
#+ of the original script.

CHUNKSIZE=4    #  Size of first chunk of split files.
OUTPREFIX=xx   #  csplit prefixes, by default,
               #+ files with "xx" ...

csplit "$0" "$CHUNKSIZE"

# Some comment lines for padding . . .
# Line 15
# Line 16
# Line 17
# Line 18
# Line 19
# Line 20

cat "$OUTPREFIX"* > "$0.copy"  # Concatenate the chunks.
rm "$OUTPREFIX"*               # Get rid of the chunks.

exit $?

Encoding and Encryption

sum, cksum, md5sum, sha1sum

These are utilities for generating checksums. A checksum is a number mathematically calculated from the contents of a file, for the purpose of checking its integrity. A script might refer to a list of checksums for security purposes, such as ensuring that the contents of key system files have not been altered or corrupted. For security applications, use the md5sum (message digest 5 checksum) command, or better yet, the newer sha1sum (Secure Hash Algorithm).

bash$ cksum /boot/vmlinuz 1670054224 804083 /boot/vmlinuz bash$ echo -n "Top Secret" | cksum 3391003827 10 bash$ md5sum /boot/vmlinuz 0f43eccea8f09e0a0b2b5cf1dcf333ba /boot/vmlinuz bash$ echo -n "Top Secret" | md5sum 8babc97a6f62a4649716f4df8d61728f -

The cksum command shows the size, in bytes, of its target, whether file or stdout.

The md5sum and sha1sum commands display a dash when they receive their input from stdout.

Example 15-36. Checking file integrity

#!/bin/bash
# file-integrity.sh: Checking whether files in a given directory
#                    have been tampered with.

E_DIR_NOMATCH=70
E_BAD_DBFILE=71

dbfile=File_record.md5
# Filename for storing records (database file).


set_up_database ()
{
  echo ""$directory"" > "$dbfile"
  # Write directory name to first line of file.
  md5sum "$directory"/* >> "$dbfile"
  # Append md5 checksums and filenames.
}

check_database ()
{
  local n=0
  local filename
  local checksum

  # ------------------------------------------- #
  #  This file check should be unnecessary,
  #+ but better safe than sorry.

  if [ ! -r "$dbfile" ]
  then
    echo "Unable to read checksum database file!"
    exit $E_BAD_DBFILE
  fi
  # ------------------------------------------- #

  while read record[n]
  do

    directory_checked="${record[0]}"
    if [ "$directory_checked" != "$directory" ]
    then
      echo "Directories do not match up!"
      # Tried to use file for a different directory.
      exit $E_DIR_NOMATCH
    fi

    if [ "$n" -gt 0 ]   # Not directory name.
    then
      filename[n]=$( echo ${record[$n]} | awk '{ print $2 }' )
      #  md5sum writes records backwards,
      #+ checksum first, then filename.
      checksum[n]=$( md5sum "${filename[n]}" )


      if [ "${record[n]}" = "${checksum[n]}" ]
      then
        echo "${filename[n]} unchanged."

      elif [ "`basename ${filename[n]}`" != "$dbfile" ]
             #  Skip over checksum database file,
             #+ as it will change with each invocation of script.
	     #  ---
	     #  This unfortunately means that when running
	     #+ this script on $PWD, tampering with the
	     #+ checksum database file will not be detected.
	     #  Exercise: Fix this.
	then
          echo "${filename[n]} : CHECKSUM ERROR!"
        # File has been changed since last checked.
      fi

      fi



    let "n+=1"
  done <"$dbfile"       # Read from checksum database file. 

}  

# =================================================== #
# main ()

if [ -z  "$1" ]
then
  directory="$PWD"      #  If not specified,
else                    #+ use current working directory.
  directory="$1"
fi  

clear                   # Clear screen.
echo " Running file integrity check on $directory"
echo

# ------------------------------------------------------------------ #
  if [ ! -r "$dbfile" ] # Need to create database file?
  then
    echo "Setting up database file, \""$directory"/"$dbfile"\"."; echo
    set_up_database
  fi  
# ------------------------------------------------------------------ #

check_database          # Do the actual work.

echo 

#  You may wish to redirect the stdout of this script to a file,
#+ especially if the directory checked has many files in it.

exit 0

#  For a much more thorough file integrity check,
#+ consider the "Tripwire" package,
#+ http://sourceforge.net/projects/tripwire/.

Also see Example A-19, Example 33-14, and Example 9-11 for creative uses of the md5sum command.

There have been reports that the 128-bit md5sum can be cracked, so the more secure 160-bit sha1sum is a welcome new addition to the checksum toolkit.

bash$ md5sum testfile
e181e2c8720c60522c4c4c981108e367  testfile


bash$ sha1sum testfile
5d7425a9c08a66c3177f1e31286fa40986ffc996  testfile

Security consultants have demonstrated that even sha1sum can be compromised. Fortunately, newer Linux distros include longer bit-length sha224sum, sha256sum, sha384sum, and sha512sum commands.

shred

Securely erase a file by overwriting it multiple times with random bit patterns before deleting it. This command has the same effect as Example 15-57, but does it in a more thorough and elegant manner.

This is one of the GNU fileutils.

Advanced forensic technology may still be able to recover the contents of a file, even after application of shred.

uuencode

This utility encodes binary files (images, sound files, compressed files, etc.) into ASCII characters, making them suitable for transmission in the body of an e-mail message or in a newsgroup posting. This is especially useful where MIME (multimedia) encoding is not available.

uudecode

This reverses the encoding, decoding uuencoded files back into the original binaries.

Example 15-37. Uudecoding encoded files

#!/bin/bash
# Uudecodes all uuencoded files in current working directory.

lines=35        # Allow 35 lines for the header (very generous).

for File in *   # Test all the files in $PWD.
do
  search1=`head -n $lines $File | grep begin | wc -w`
  search2=`tail -n $lines $File | grep end | wc -w`
  #  Uuencoded files have a "begin" near the beginning,
  #+ and an "end" near the end.
  if [ "$search1" -gt 0 ]
  then
    if [ "$search2" -gt 0 ]
    then
      echo "uudecoding - $File -"
      uudecode $File
    fi  
  fi
done  

#  Note that running this script upon itself fools it
#+ into thinking it is a uuencoded file,
#+ because it contains both "begin" and "end".

#  Exercise:
#  --------
#  Modify this script to check each file for a newsgroup header,
#+ and skip to next if not found.

exit 0

The fold -s command may be useful (possibly in a pipe) to process long uudecoded text messages downloaded from Usenet newsgroups.

mimencode, mmencode

The mimencode and mmencode commands process multimedia-encoded e-mail attachments. Although mail user agents (such as pine or kmail) normally handle this automatically, these particular utilities permit manipulating such attachments manually from the command line or in batch processing mode by means of a shell script.

crypt

At one time, this was the standard UNIX file encryption utility. [3] Politically motivated government regulations prohibiting the export of encryption software resulted in the disappearance of crypt from much of the UNIX world, and it is still missing from most Linux distributions. Fortunately, programmers have come up with a number of decent alternatives to it, among them the author's very own cruft (see Example A-4).

Miscellaneous

mktemp

Create a temporary file [4] with a "unique" filename. When invoked from the command line without additional arguments, it creates a zero-length file in the /tmp directory.

bash$ mktemp /tmp/tmp.zzsvql3154

PREFIX=filename tempfile=`mktemp $PREFIX.XXXXXX` # ^^^^^^ Need at least 6 placeholders #+ in the filename template. # If no filename template supplied, #+ "tmp.XXXXXXXXXX" is the default. echo "tempfile name = $tempfile" # tempfile name = filename.QA2ZpY # or something similar... # Creates a file of that name in the current working directory #+ with 600 file permissions. # A "umask 177" is therefore unnecessary, #+ but it's good programming practice anyhow.

make

Utility for building and compiling binary packages. This can also be used for any set of operations that is triggered by incremental changes in source files.

The make command checks a Makefile, a list of file dependencies and operations to be carried out.

The make utility is, in effect, a powerful scripting language similar in many ways to Bash, but with the capability of recognizing dependencies. For in-depth coverage of this useful tool set, see the GNU software documentation site.

install

Special purpose file copying command, similar to cp, but capable of setting permissions and attributes of the copied files. This command seems tailormade for installing software packages, and as such it shows up frequently in Makefiles (in the make install : section). It could likewise find use in installation scripts.

dos2unix

This utility, written by Benjamin Lin and collaborators, converts DOS-formatted text files (lines terminated by CR-LF) to UNIX format (lines terminated by LF only), and vice-versa.

ptx

The ptx [targetfile] command outputs a permuted index (cross-reference list) of the targetfile. This may be further filtered and formatted in a pipe, if necessary.

more, less

Pagers that display a text file or stream to stdout, one screenful at a time. These may be used to filter the output of stdout . . . or of a script.

An interesting application of more is to "test drive" a command sequence, to forestall potentially unpleasant consequences.
ls /home/bozo | awk '{print "rm -rf " $1}' | more # ^^^^ # Testing the effect of the following (disastrous) command line: # ls /home/bozo | awk '{print "rm -rf " $1}' | sh # Hand off to the shell to execute . . . ^^

[1]	An archive, in the sense discussed here, is simply a set of related files stored in a single location.
[2]	A tar czvf archive_name.tar.gz * will include dotfiles in directories below the current working directory. This is an undocumented GNU tar "feature".
[3]	This is a symmetric block cipher, used to encrypt files on a single system or local network, as opposed to the "public key" cipher class, of which pgp is a well-known example.
[4]	Creates a temporary directory when invoked with the `-d` option.

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15.5. File and Archiving Commands

Notes